SCOPe 2.08: Domain d3q38a_: 3q38 A:

Lineage for d3q38a_ (3q38 A:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Norwalk virus [TaxId:11983] [419865] (22 PDB entries)

8. Domain d3q38a_: 3q38 A: [413364]
   automated match to d5or7a_
   complexed with edo, imd

Details for d3q38a_

PDB Entry: 3q38, 1.28 Å

PDB Description: crystal structure of p domain from norwalk virus strain vietnam 026 in complex with hbga type b (triglycan)

PDB Compounds: (A:) capsid protein

SCOPe Domain Sequences for d3q38a_:

Sequence; same for both SEQRES and ATOM records:

>d3q38a_ b.121.4.0 (A:) automated matches {Norwalk virus [TaxId: 11983]}
skpftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgi
cafrgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrnt
ntvpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvd
anshfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpq
ewvqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyf
rfdswvnqfytlapm

Timeline for d3q38a_:

• d3q38a_ is new in SCOPe 2.08-stable