Lineage for d3jcla4 (3jcl A:717-1118)

  1. Root: SCOPe 2.08
  2. 3039230Class h: Coiled coil proteins [57942] (7 folds)
  3. 3040824Fold h.3: Stalk segment of viral fusion proteins [58063] (3 superfamilies)
    core: trimeric coiled coil
  4. 3042207Superfamily h.3.3: Coronavirus S2 glycoprotein [111474] (2 families) (S)
  5. 3042243Family h.3.3.2: Coronavirus spike glycoprotein S2 subunit [418800] (1 protein)
    includes beta sheet and helical linker in addition to coiled coil
    Pfam PF01601
  6. 3042244Protein Coronavirus spike glycoprotein S1 [419103] (1 species)
  7. 3042245Species Murine hepatitis virus (strain a59) [TaxID:11142] [419614] (1 PDB entry)
  8. 3042246Domain d3jcla4: 3jcl A:717-1118 [413259]
    Other proteins in same PDB: d3jcla1, d3jcla2, d3jcla3

Details for d3jcla4

PDB Entry: 3jcl (more details), 4 Å

PDB Description: cryo-electron microscopy structure of a coronavirus spike glycoprotein trimer
PDB Compounds: (A:) Spike glycoprotein

SCOPe Domain Sequences for d3jcla4:

Sequence, based on SEQRES records: (download)

>d3jcla4 h.3.3.2 (A:717-1118) Coronavirus spike glycoprotein S1 {Murine hepatitis virus (strain a59) [TaxID:11142]}
ssvstgyrlttfepytpmlvndsvqsvdglyemqiptnftighheefiqtrspkvtidca
afvcgdntacrqqlveygsfcvnvnailnevnnlldnmqlqvasalmqgvtissrlpdgi
sgpiddinfspllgcigstcaedgngpsairgrsaiedllfdkvklsdvgfveaynnctg
gqevrdllcvqsfngikvlppvlsesqisgyttgataaamfppwsaaagvpfslsvqyri
nglgvtmnvlsenqkmiasafnnalgaiqdgfdatnsalgkiqsvvnanaealnnllnql
snrfgaisaslqeiltrleaveakaqidrlingrltalnayiskqlsdstlikvsaaqai
ekvnecvksqttrinfcgngnhilslvqnapyglyfihfsyv

Sequence, based on observed residues (ATOM records): (download)

>d3jcla4 h.3.3.2 (A:717-1118) Coronavirus spike glycoprotein S1 {Murine hepatitis virus (strain a59) [TaxID:11142]}
ssvstgyrlttfepytpmlvndsvqsvdglyemqiptnftighheefiqtrspkvtidca
afvcgdntacrqqlveygsfcvnvnailnevnnlldnmqlqvasalmqgvsairgrsaie
dllfdkvklsdvgfveaynnctggqevrdllcvqsfngikvlppvlsesqisgyttgata
aamfppwsaaagvpfslsvqyringlgvtmnvlsenqkmiasafnnalgaiqdgfdatns
algkiqsvvnanaealnnllnqlsnrfgaisaslqeiltrleaveakaqidrlingrlta
lnayiskqlsdstlikvsaaqaiekvnecvksqttrinfcgngnhilslvqnapyglyfi
hfsyv

SCOPe Domain Coordinates for d3jcla4:

Click to download the PDB-style file with coordinates for d3jcla4.
(The format of our PDB-style files is described here.)

Timeline for d3jcla4:

  • d3jcla4 is new in SCOPe 2.08-stable