Lineage for d1berb3 (1ber B:9-137)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2814470Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 2816658Superfamily b.82.3: cAMP-binding domain-like [51206] (4 families) (S)
  5. 2816664Family b.82.3.2: cAMP-binding domain [51210] (13 proteins)
    Pfam PF00027
  6. 2816665Protein Catabolite gene activator protein, N-terminal domain [51211] (1 species)
  7. 2816666Species Escherichia coli [TaxId:562] [51212] (32 PDB entries)
  8. 2816689Domain d1berb3: 1ber B:9-137 [412669]
    Other proteins in same PDB: d1bera4, d1berb4
    automated match to d1i5za2
    protein/DNA complex

Details for d1berb3

PDB Entry: 1ber (more details), 2.5 Å

PDB Description: structure of the cap-dna complex at 2.5 angstroms resolution: a complete picture of the protein-dna interface
PDB Compounds: (B:) Catabolite gene activator

SCOPe Domain Sequences for d1berb3:

Sequence; same for both SEQRES and ATOM records: (download)

>d1berb3 b.82.3.2 (B:9-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafl

SCOPe Domain Coordinates for d1berb3:

Click to download the PDB-style file with coordinates for d1berb3.
(The format of our PDB-style files is described here.)

Timeline for d1berb3:

  • d1berb3 is new in SCOPe 2.08-stable

View in 3D
Domains from same chain:
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d1berb4