Lineage for d1bera4 (1ber A:138-207)

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2691777Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 2692959Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families) (S)
    contains a small beta-sheet (wing)
  5. 2693005Family a.4.5.4: CAP C-terminal domain-like [46796] (9 proteins)
  6. 2693006Protein Catabolite gene activator protein (CAP), C-terminal domain [46797] (1 species)
    N-terminal domain has double beta-helix fold
  7. 2693007Species Escherichia coli [TaxId:562] [46798] (28 PDB entries)
  8. 2693027Domain d1bera4: 1ber A:138-207 [412668]
    Other proteins in same PDB: d1bera3, d1berb3
    automated match to d1i5zb1
    protein/DNA complex

Details for d1bera4

PDB Entry: 1ber (more details), 2.5 Å

PDB Description: structure of the cap-dna complex at 2.5 angstroms resolution: a complete picture of the protein-dna interface
PDB Compounds: (A:) Catabolite gene activator

SCOPe Domain Sequences for d1bera4:

Sequence; same for both SEQRES and ATOM records: (download)

>d1bera4 a.4.5.4 (A:138-207) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

SCOPe Domain Coordinates for d1bera4:

Click to download the PDB-style file with coordinates for d1bera4.
(The format of our PDB-style files is described here.)

Timeline for d1bera4:

  • d1bera4 is new in SCOPe 2.08-stable

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