Lineage for d6xw7a1 (6xw7 A:226-530)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2822534Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2822535Protein automated matches [190988] (51 species)
    not a true protein
  7. 2822692Species Murine norovirus 1 [TaxId:223997] [372678] (13 PDB entries)
  8. 2822705Domain d6xw7a1: 6xw7 A:226-530 [412201]
    Other proteins in same PDB: d6xw7a2, d6xw7c1, d6xw7c2, d6xw7c3, d6xw7d1, d6xw7d2, d6xw7d3, d6xw7g1, d6xw7g2, d6xw7g3, d6xw7h1, d6xw7h2
    automated match to d5or7a_
    complexed with cho, edo, mg

Details for d6xw7a1

PDB Entry: 6xw7 (more details), 2.15 Å

PDB Description: crystal structure of murine norovirus p domain in complex with nanobody nb-5829 and glycochenodeoxycholate (gcdca)
PDB Compounds: (A:) capsid protein

SCOPe Domain Sequences for d6xw7a1:

Sequence, based on SEQRES records: (download)

>d6xw7a1 b.121.4.0 (A:226-530) automated matches {Murine norovirus 1 [TaxId: 223997]}
iyrmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgsw
vscfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettk
tgdklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdti
peyndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasna
ftvqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprly
qlasv

Sequence, based on observed residues (ATOM records): (download)

>d6xw7a1 b.121.4.0 (A:226-530) automated matches {Murine norovirus 1 [TaxId: 223997]}
iyrmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgsw
vscfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettk
tgdklkvttfemilgptdqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipey
ndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaftv
qsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyqla
sv

SCOPe Domain Coordinates for d6xw7a1:

Click to download the PDB-style file with coordinates for d6xw7a1.
(The format of our PDB-style files is described here.)

Timeline for d6xw7a1:

  • d6xw7a1 is new in SCOPe 2.08-stable