Lineage for d6h6lc_ (6h6l C:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2822534Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2822535Protein automated matches [190988] (51 species)
    not a true protein
  7. 2822692Species Murine norovirus 1 [TaxId:223997] [372678] (13 PDB entries)
  8. 2822713Domain d6h6lc_: 6h6l C: [411197]
    Other proteins in same PDB: d6h6le_, d6h6lf_, d6h6lg_, d6h6lh_
    automated match to d5or7a_
    complexed with cho, edo, mg, na

Details for d6h6lc_

PDB Entry: 6h6l (more details), 2.5 Å

PDB Description: murine norovirus protruding domain (cw3 strain) in complex with the cd300lf receptor and glycochenodeoxycholate (gcdca)
PDB Compounds: (C:) capsid protein

SCOPe Domain Sequences for d6h6lc_:

Sequence, based on SEQRES records: (download)

>d6h6lc_ b.121.4.0 (C:) automated matches {Murine norovirus 1 [TaxId: 223997]}
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asv

Sequence, based on observed residues (ATOM records): (download)

>d6h6lc_ b.121.4.0 (C:) automated matches {Murine norovirus 1 [TaxId: 223997]}
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsygpltfptdgifevvswvprlyqlasv

SCOPe Domain Coordinates for d6h6lc_:

Click to download the PDB-style file with coordinates for d6h6lc_.
(The format of our PDB-style files is described here.)

Timeline for d6h6lc_:

  • d6h6lc_ is new in SCOPe 2.08-stable