Lineage for d6ck9h1 (6ck9 H:6-213)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2754035Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2754036Protein automated matches [190740] (30 species)
    not a true protein
  7. 2754280Species Human (Homo sapiens) [TaxId:9606] [187920] (1747 PDB entries)
  8. 2757826Domain d6ck9h1: 6ck9 H:6-213 [410941]
    Other proteins in same PDB: d6ck9h2, d6ck9l2
    automated match to d6shgh_
    complexed with nag

Details for d6ck9h1

PDB Entry: 6ck9 (more details), 2.71 Å

PDB Description: crystal structure of hiv-1 conc_base0 prefusion env trimer in complex with human antibody fragment 3h109l and 35o22 variants at 3.5 angstrom
PDB Compounds: (H:) 3H109L Fab heavy chain

SCOPe Domain Sequences for d6ck9h1:

Sequence, based on SEQRES records: (download)

>d6ck9h1 b.1.1.0 (H:6-213) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esgpglvkpsetlsltctvsggsisnyywswirqspgkglewigyisdsestnynpslks
rviisvdtsknqlslklnsvtaadsaiyycaraqqgkriygmvsfgeffyyyymdvwgkg
ttvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

Sequence, based on observed residues (ATOM records): (download)

>d6ck9h1 b.1.1.0 (H:6-213) automated matches {Human (Homo sapiens) [TaxId: 9606]}
esgpglvkpsetlsltctvsggsisnyywswirqspgkglewigyisdsestnynpslks
rviisvdtsknqlslklnsvtaadsaiyycaraqqgkriygmvsfgeffyyyymdvwgkg
ttvtvssastkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtqtyicnvnhkpsntkvdkkvep

SCOPe Domain Coordinates for d6ck9h1:

Click to download the PDB-style file with coordinates for d6ck9h1.
(The format of our PDB-style files is described here.)

Timeline for d6ck9h1:

  • d6ck9h1 is new in SCOPe 2.08-stable