Lineage for d6ca9b_ (6ca9 B:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2742100Protein automated matches [190119] (24 species)
    not a true protein
  7. 2742214Species Human (Homo sapiens) [TaxId:9606] [188740] (709 PDB entries)
  8. 2743373Domain d6ca9b_: 6ca9 B: [410935]
    Other proteins in same PDB: d6ca9a2, d6ca9c2
    automated match to d6shgh_
    complexed with gol, peg

Details for d6ca9b_

PDB Entry: 6ca9 (more details), 2.7 Å

PDB Description: crystal structure of fab pct64_lmca (sar), the least mutated common ancestor of the hiv-1 broadly neutralizing antibody lineage pct64
PDB Compounds: (B:) PCT64_LMCA Fab heavy chain

SCOPe Domain Sequences for d6ca9b_:

Sequence, based on SEQRES records: (download)

>d6ca9b_ b.1.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesggglvkpggslrlscaasgftfsnawmswvrqapgkglewvgriksktdggtt
dyaapvkgrftisrddskntlylqmnslktedtavyycttgvetydfwsgyddhyydyyf
rdvwgkgttvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgal
tsgvhtfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

Sequence, based on observed residues (ATOM records): (download)

>d6ca9b_ b.1.1.1 (B:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesggglvkpggslrlscaasgftfsnawmswvrqapgkglewvgriksktdggtt
dyaapvkgrftisrddskntlylqmnslktedtavyycttgvetydfwsgyddhyydyyf
rdvwgkgttvtvssastkgpsvfplapsskstaalgclvkdyfpepvtvswnsgaltsgv
htfpavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

SCOPe Domain Coordinates for d6ca9b_:

Click to download the PDB-style file with coordinates for d6ca9b_.
(The format of our PDB-style files is described here.)

Timeline for d6ca9b_:

  • d6ca9b_ is new in SCOPe 2.08-stable