Lineage for d6c6qb_ (6c6q B:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2822534Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2822535Protein automated matches [190988] (51 species)
    not a true protein
  7. 2822692Species Murine norovirus 1 [TaxId:223997] [372678] (13 PDB entries)
  8. 2822704Domain d6c6qb_: 6c6q B: [410921]
    Other proteins in same PDB: d6c6qd_, d6c6qf_
    automated match to d5or7a_
    complexed with cl, edo, mg

Details for d6c6qb_

PDB Entry: 6c6q (more details), 2 Å

PDB Description: crystal structure of the murine norovirus vp1 p domain in complex with the cd300lf receptor
PDB Compounds: (B:) Capsid protein VP1

SCOPe Domain Sequences for d6c6qb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6c6qb_ b.121.4.0 (B:) automated matches {Murine norovirus 1 [TaxId: 223997]}
mvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvsc
faaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktgd
klkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipey
ndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaftv
qsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyqla
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SCOPe Domain Coordinates for d6c6qb_:

Click to download the PDB-style file with coordinates for d6c6qb_.
(The format of our PDB-style files is described here.)

Timeline for d6c6qb_:

  • d6c6qb_ is new in SCOPe 2.08-stable