Lineage for d5odba_ (5odb A:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2742100Protein automated matches [190119] (23 species)
    not a true protein
  7. 2742214Species Human (Homo sapiens) [TaxId:9606] [188740] (689 PDB entries)
  8. 2742293Domain d5odba_: 5odb A: [410450]
    Other proteins in same PDB: d5odbb2
    automated match to d6shgh_
    complexed with gol, so4

Details for d5odba_

PDB Entry: 5odb (more details), 1.53 Å

PDB Description: crystal structure of the ra-associated mab d10 (chimeric fab fragment)
PDB Compounds: (A:) D10 Fab fragment - heavy chain

SCOPe Domain Sequences for d5odba_:

Sequence, based on SEQRES records: (download)

>d5odba_ b.1.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesgggvvqpgrslrlscaasgftfssydmhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskntlylhmnslraedtavyycskvrgaaatgyyygmdvwgqgttv
tvssakttapsvyplapvcgdttgssvtlgclvkgyfpepvtltwnsgslssgvhtfpav
lqsdlytlsssvtvtsstwpsqsitcnvahpasstkvdkkiep

Sequence, based on observed residues (ATOM records): (download)

>d5odba_ b.1.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesgggvvqpgrslrlscaasgftfssydmhwvrqapgkglewvavisydgsnkyy
adsvkgrftisrdnskntlylhmnslraedtavyycskvrgaaatgyyygmdvwgqgttv
tvssakttapsvyplapvssvtlgclvkgyfpepvtltwnsgslssgvhtfpavlqsdly
tlsssvtvtsstwpsqsitcnvahpasstkvdkkiep

SCOPe Domain Coordinates for d5odba_:

Click to download the PDB-style file with coordinates for d5odba_.
(The format of our PDB-style files is described here.)

Timeline for d5odba_:

  • d5odba_ is new in SCOPe 2.08-stable