Lineage for d5o04a_ (5o04 A:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2822534Family b.121.4.0: automated matches [191569] (1 protein)
    not a true family
  6. 2822535Protein automated matches [190988] (51 species)
    not a true protein
  7. 2822920Species Norwalk virus [TaxId:11983] [419865] (22 PDB entries)
  8. 2822961Domain d5o04a_: 5o04 A: [410422]
    Other proteins in same PDB: d5o04c1, d5o04c2, d5o04c3, d5o04d1, d5o04d2, d5o04e1, d5o04e2, d5o04f1, d5o04f2
    automated match to d5or7a_
    complexed with edo

Details for d5o04a_

PDB Entry: 5o04 (more details), 2.3 Å

PDB Description: gii.10 vietnam 026 norovirus protruding domain in complex with nanobody nano-26 and nano-85
PDB Compounds: (A:) capsid protein

SCOPe Domain Sequences for d5o04a_:

Sequence, based on SEQRES records: (download)

>d5o04a_ b.121.4.0 (A:) automated matches {Norwalk virus [TaxId: 11983]}
pftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgica
frgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntnt
vpgegnlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdan
shfdqwtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqew
vqhlyqesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrf
dswvnqfytlapm

Sequence, based on observed residues (ATOM records): (download)

>d5o04a_ b.121.4.0 (A:) automated matches {Norwalk virus [TaxId: 11983]}
pftlpiltlgeltnsrfplpidvlytnpnesaivqcqngrctldgelqgttqllptgica
frgkvtqqvqdehrgthwnmtvtnlngtpfdptedvpaplgtpdfsgqiygvisqrntng
nlpanraheaviatyspkftpklgniqfstwetqdvssgqptkftpvglasvdanshfdq
wtlpsysgaltlnmnlapsvapvfpgecllffrsfiplkggygnpaidclmpqewvqhly
qesapslsdvalvryvnpetgrtlfeaklhrngfltvarnsagpvvaptngyfrfdswvn
qfytlapm

SCOPe Domain Coordinates for d5o04a_:

Click to download the PDB-style file with coordinates for d5o04a_.
(The format of our PDB-style files is described here.)

Timeline for d5o04a_:

  • d5o04a_ is new in SCOPe 2.08-stable