Lineage for d5i8ec_ (5i8e C:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2754035Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2754036Protein automated matches [190740] (31 species)
    not a true protein
  7. 2754280Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)
  8. 2758706Domain d5i8ec_: 5i8e C: [410168]
    automated match to d6shgh_
    complexed with zn

Details for d5i8ec_

PDB Entry: 5i8e (more details), 2.66 Å

PDB Description: crystal structure of broadly neutralizing hiv-1 fusion peptide- targeting antibody vrc34.01 fab
PDB Compounds: (C:) VRC34.01 Fab heavy chain

SCOPe Domain Sequences for d5i8ec_:

Sequence, based on SEQRES records: (download)

>d5i8ec_ b.1.1.0 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qevlvqsgaevkkpgasvkvscrafgytftgnalhwvrqapgqglewlgwinphsgdttt
sqkfqgrvymtrdksintafldvtrltsddtgiyycardkyygneavgmdvwgqgtsvtv
ssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlq
ssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

Sequence, based on observed residues (ATOM records): (download)

>d5i8ec_ b.1.1.0 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qevlvqsgaevkkpgasvkvscrafgytftgnalhwvrqapgqglewlgwinphsgdttt
sqkfqgrvymtrdksintafldvtrltsddtgiyycardkyygneavgmdvwgqgtsvtv
ssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglys
lssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

SCOPe Domain Coordinates for d5i8ec_:

Click to download the PDB-style file with coordinates for d5i8ec_.
(The format of our PDB-style files is described here.)

Timeline for d5i8ec_:

  • d5i8ec_ is new in SCOPe 2.08-stable