Lineage for d4m5zh_ (4m5z H:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2754035Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2754036Protein automated matches [190740] (31 species)
    not a true protein
  7. 2754280Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)
  8. 2756008Domain d4m5zh_: 4m5z H: [409172]
    automated match to d6shgh_

Details for d4m5zh_

PDB Entry: 4m5z (more details), 2.25 Å

PDB Description: Crystal structure of broadly neutralizing antibody 5J8 bound to 2009 pandemic influenza hemagglutinin, HA1 subunit
PDB Compounds: (H:) Fab 5J8 heavy chain

SCOPe Domain Sequences for d4m5zh_:

Sequence, based on SEQRES records: (download)

>d4m5zh_ b.1.1.0 (H:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesgpglvkpsdilsltcavsgysissnyywgwirqppgkglewigsiyhsgstyy
kpslesrlgisvdtsknqfslklsfvsaadtavyycarhvrsgypdtayyfdkwgqgtlv
tvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks

Sequence, based on observed residues (ATOM records): (download)

>d4m5zh_ b.1.1.0 (H:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
evqlvesgpglvkpsdilsltcavsgysissnyywgwirqppgkglewigsiyhsgstyy
kpslesrlgisvdtsknqfslklsfvsaadtavyycarhvrsgypdtayyfdkwgqgtlv
tvssastkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepks

SCOPe Domain Coordinates for d4m5zh_:

Click to download the PDB-style file with coordinates for d4m5zh_.
(The format of our PDB-style files is described here.)

Timeline for d4m5zh_:

  • d4m5zh_ is new in SCOPe 2.08-stable