Lineage for d4i3rh_ (4i3r H:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2754035Family b.1.1.0: automated matches [191470] (1 protein)
    not a true family
  6. 2754036Protein automated matches [190740] (31 species)
    not a true protein
  7. 2754280Species Human (Homo sapiens) [TaxId:9606] [187920] (1793 PDB entries)
  8. 2758361Domain d4i3rh_: 4i3r H: [409016]
    Other proteins in same PDB: d4i3rl2
    automated match to d6shgh_
    complexed with nag

Details for d4i3rh_

PDB Entry: 4i3r (more details), 3 Å

PDB Description: crystal structure of the outer domain of hiv-1 gp120 in complex with vrc-pg04 space group p3221
PDB Compounds: (H:) Heavy chain of VRC-PG04 Fab

SCOPe Domain Sequences for d4i3rh_:

Sequence; same for both SEQRES and ATOM records: (download)

>d4i3rh_ b.1.1.0 (H:) automated matches {Human (Homo sapiens) [TaxId: 9606]}
qvqlvqsgsgvkkpgasvrvscwtsedifertelihwvrqapgqglewigwvktvtgavn
fgspdfrqrvsltrdrdlftahmdirgltqgdtatyfcarqkfytggqgwyfdlwgrgtl
ivvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpa
vlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

SCOPe Domain Coordinates for d4i3rh_:

Click to download the PDB-style file with coordinates for d4i3rh_.
(The format of our PDB-style files is described here.)

Timeline for d4i3rh_:

  • d4i3rh_ is new in SCOPe 2.08-stable