Lineage for d1d7ea_ (1d7e A:)

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2576610Fold d.110: Profilin-like [55769] (10 superfamilies)
    core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha
  4. 2576905Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families) (S)
    alpha-beta(2)-alpha(2)-beta(3)
  5. 2576906Family d.110.3.1: PYP-like [55786] (3 proteins)
  6. 2576907Protein Photoactive yellow protein, PYP [55787] (1 species)
  7. 2576908Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (82 PDB entries)
    Uniprot P16113
  8. 2576939Domain d1d7ea_: 1d7e A: [40900]
    the p65 crystal form
    complexed with hc4

Details for d1d7ea_

PDB Entry: 1d7e (more details), 1.39 Å

PDB Description: crystal structure of the p65 crystal form of photoactive yellow protein
PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1d7ea_:

Sequence, based on SEQRES records: (download)

>d1d7ea_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvk
rv

Sequence, based on observed residues (ATOM records): (download)

>d1d7ea_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkaldsywvfvkrv

SCOPe Domain Coordinates for d1d7ea_:

Click to download the PDB-style file with coordinates for d1d7ea_.
(The format of our PDB-style files is described here.)

Timeline for d1d7ea_: