SCOPe 2.01: Domain d1d7ea_: 1d7e A:

Lineage for d1d7ea_ (1d7e A:)

1. Root: SCOPe 2.01

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.110: Profilin-like [55769] (10 superfamilies)
   core: 2 alpha-helices and 5-stranded antiparallel sheet: order 21543; 3 layers: alpha/beta/alpha

4. Superfamily d.110.3: PYP-like sensor domain (PAS domain) [55785] (8 families)
   alpha-beta(2)-alpha(2)-beta(3)

5. Family d.110.3.1: PYP-like [55786] (2 proteins)

6. Protein Photoactive yellow protein, PYP [55787] (1 species)

7. Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [55788] (47 PDB entries)
   Uniprot P16113

8. Domain d1d7ea_: 1d7e A: [40900]
   the p65 crystal form
   complexed with hc4

Details for d1d7ea_

PDB Entry: 1d7e, 1.39 Å

PDB Description: crystal structure of the p65 crystal form of photoactive yellow protein

PDB Compounds: (A:) Photoactive yellow protein

SCOPe Domain Sequences for d1d7ea_:

Sequence, based on SEQRES records:

>d1d7ea_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkalsgdsywvfvk
rv

Sequence, based on observed residues (ATOM records):

>d1d7ea_ d.110.3.1 (A:) Photoactive yellow protein, PYP {Methylophilus methylotrophus, strain w3a1 [TaxId: 17]}
vafgsedientlakmddgqldglafgaiqldgdgnilqynaaegditgrdpkqvigknff
kdvapctdspefygkfkegvasgnlntmfeytfdyqmtptkvkvhmkkaldsywvfvkrv

Timeline for d1d7ea_:

• d1d7ea_ first appeared (with stable ids) in SCOP 1.55
  
• d1d7ea_ appears in SCOP 1.75
  
• d1d7ea_ appears in SCOPe 2.02
  
• d1d7ea_ appears in the current release, SCOPe 2.08