Lineage for d3rkdh_ (3rkd H:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2742100Protein automated matches [190119] (23 species)
    not a true protein
  7. 2744177Species Mouse (Mus musculus) [TaxId:10090] [186842] (610 PDB entries)
  8. 2744496Domain d3rkdh_: 3rkd H: [408650]
    Other proteins in same PDB: d3rkdc1, d3rkdc2, d3rkdl1, d3rkdl2
    automated match to d6shgh_

Details for d3rkdh_

PDB Entry: 3rkd (more details), 1.9 Å

PDB Description: hepatitis e virus e2s domain (genotype i) in complex with a neutralizing antibody
PDB Compounds: (H:) monoclonal antibody, heavy chain

SCOPe Domain Sequences for d3rkdh_:

Sequence, based on SEQRES records: (download)

>d3rkdh_ b.1.1.1 (H:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
qvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvgwirqpsgkglewlahiwwddvkr
yspalksrltiskdtsssqlflkiasvdtadtatyycariksvittgdyaldywgqgtsv
avssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpav
lqsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

Sequence, based on observed residues (ATOM records): (download)

>d3rkdh_ b.1.1.1 (H:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
qvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvgwirqpsgkglewlahiwwddvkr
yspalksrltiskdtsssqlflkiasvdtadtatyycariksvittgdyaldywgqgtsv
avssakttppsvyplapgsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdly
tlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr

SCOPe Domain Coordinates for d3rkdh_:

Click to download the PDB-style file with coordinates for d3rkdh_.
(The format of our PDB-style files is described here.)

Timeline for d3rkdh_:

  • d3rkdh_ is new in SCOPe 2.08-stable