Lineage for d3okdb_ (3okd B:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2739517Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2739518Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2739519Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2742100Protein automated matches [190119] (24 species)
    not a true protein
  7. 2744177Species Mouse (Mus musculus) [TaxId:10090] [186842] (615 PDB entries)
  8. 2744276Domain d3okdb_: 3okd B: [408569]
    Other proteins in same PDB: d3okda1, d3okda2
    automated match to d6shgh_
    complexed with kdo, peg, zn

Details for d3okdb_

PDB Entry: 3okd (more details), 1.8 Å

PDB Description: crystal structure of s25-39 in complex with kdo
PDB Compounds: (B:) S25-39 Fab (IgG1k) heavy chain

SCOPe Domain Sequences for d3okdb_:

Sequence, based on SEQRES records: (download)

>d3okdb_ b.1.1.1 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
evklvesggglvqpggslrlacatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsslylqmntlraedsatyycardhdgyyerfaywgqgtlvtv
saaattppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslstgvhtfpavls
sdlytltssvtvpsktwpsetvtcnvahpasstkvdkkivp

Sequence, based on observed residues (ATOM records): (download)

>d3okdb_ b.1.1.1 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
evklvesggglvqpggslrlacatsgftftdyymswvrqppgkalewlgfirnkakgytt
eysasvkgrftisrdnsqsslylqmntlraedsatyycardhdgyyerfaywgqgtlvtv
saaattppsvyplapgstnsmvtlgclvkgyfpepvtvtwnsgslstgvhtfpavlssdl
ytltssvtvpsktwpsetvtcnvahpasstkvdkkivp

SCOPe Domain Coordinates for d3okdb_:

Click to download the PDB-style file with coordinates for d3okdb_.
(The format of our PDB-style files is described here.)

Timeline for d3okdb_:

  • d3okdb_ is new in SCOPe 2.08-stable