Lineage for d1ggmb2 (1ggm B:1-394)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1920668Fold d.104: Class II aaRS and biotin synthetases [55680] (1 superfamily)
    contains large mixed beta-sheet
  4. 1920669Superfamily d.104.1: Class II aaRS and biotin synthetases [55681] (5 families) (S)
  5. 1920670Family d.104.1.1: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain [55682] (16 proteins)
  6. 1920729Protein Glycyl-tRNA synthetase (GlyRS) [55692] (1 species)
  7. 1920730Species Thermus thermophilus [TaxId:274] [55693] (3 PDB entries)
  8. 1920736Domain d1ggmb2: 1ggm B:1-394 [40750]
    Other proteins in same PDB: d1ggma1, d1ggmb1
    protein/RNA complex; complexed with gap

Details for d1ggmb2

PDB Entry: 1ggm (more details), 3.4 Å

PDB Description: glycyl-trna synthetase from thermus thermophilus complexed with glycyl-adenylate
PDB Compounds: (B:) protein (glycyl-tRNA synthetase)

SCOPe Domain Sequences for d1ggmb2:

Sequence; same for both SEQRES and ATOM records: (download)

>d1ggmb2 d.104.1.1 (B:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
aassldelvalckrrgfifqsseiygglqgvydygplgvelknnlkqawwrrnvyerddm
egldasvlthrlvlhysgheatfadpmvdnakarywtppryfnmmfqdlrgprggrglla
ylrpetaqgifvnfknvldatsrklgfgiaqigkafrneitprnfifrvrefeqmeieyf
vrpgedeywhrywveerlkwwqemglsrenlvpyqqppessahyakatvdilyrfphgsl
elegiaqrtdfdlgshtkdqealgitarvlrnehstqrlayrdpetgkwfvpyviepsag
vdrgvlallaeaftreelpngeerivlklkp

SCOPe Domain Coordinates for d1ggmb2:

Click to download the PDB-style file with coordinates for d1ggmb2.
(The format of our PDB-style files is described here.)

Timeline for d1ggmb2:

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Domains from same chain:
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d1ggmb1