SCOP 1.75: Domain d1efnb_: 1efn B:

Lineage for d1efnb_ (1efn B:)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.102: Regulatory factor Nef [55670] (1 superfamily)
   alpha(2)-beta(4)-alpha; 3 layers: alpha/beta/alpha

4. Superfamily d.102.1: Regulatory factor Nef [55671] (1 family)

5. Family d.102.1.1: Regulatory factor Nef [55672] (1 protein)

6. Protein Regulatory factor Nef [55673] (1 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [55674] (4 PDB entries)

8. Domain d1efnb_: 1efn B: [40699]
   Other proteins in same PDB: d1efna_, d1efnc_

Details for d1efnb_

PDB Entry: 1efn, 2.5 Å

PDB Description: hiv-1 nef protein in complex with r96i mutant fyn sh3 domain

PDB Compounds: (B:) hiv-1 nef protein

SCOP Domain Sequences for d1efnb_:

Sequence, based on SEQRES records:

>d1efnb_ d.102.1.1 (B:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]}
rpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpg
pgvrypltfgwcyklvpvepdkveeankgentsllhpvslhgmddperevlewrfdsrla
fhhvarelhpeyf

Sequence, based on observed residues (ATOM records):

>d1efnb_ d.102.1.1 (B:) Regulatory factor Nef {Human immunodeficiency virus type 1 [TaxId: 11676]}
rpqvplrpmtykaavdlshflkekggleglihsqrrqdildlwiyhtqgyfpdwqnytpg
pgvrypltfgwcyklvpvrevlewrfdsrlafhhvarelhpeyf

Timeline for d1efnb_:

• d1efnb_ first appeared (with stable ids) in SCOP 1.55
  
• d1efnb_ appears in SCOP 1.73
  
• d1efnb_ appears in SCOPe 2.01
  
• d1efnb_ appears in the current release, SCOPe 2.08