SCOPe 2.07: Domain d1vdeb3: 1vde B:299-415

Lineage for d1vdeb3 (1vde B:299-415)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
   alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243

4. Superfamily d.95.2: Homing endonucleases [55608] (3 families)

5. Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
   duplication: contains tandem repeat of this fold

6. Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
   homing endonuclease with protein splicing activity

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (7 PDB entries)
   Uniprot P17255 284-737

8. Domain d1vdeb3: 1vde B:299-415 [40584]
   Other proteins in same PDB: d1vdea1, d1vdeb1

Details for d1vdeb3

PDB Entry: 1vde, 2.4 Å

PDB Description: pi-scei, a homing endonuclease with protein splicing activity

PDB Compounds: (B:) pi-scei

SCOPe Domain Sequences for d1vdeb3:

Sequence, based on SEQRES records:

>d1vdeb3 d.95.2.2 (B:299-415) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gvknipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslg
lvvsvnaepakvdmngtkhkisyaiymsggdvllnvlskcagskkfrpapaaafare

Sequence, based on observed residues (ATOM records):

>d1vdeb3 d.95.2.2 (B:299-415) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
gvknipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslg
lvvsvnaepatkhkisyaiymsggdvllnvlskcagskkfrpapaaafare

Timeline for d1vdeb3:

• d1vdeb3 first appeared (with stable ids) in SCOP 1.55
  
• d1vdeb3 appears in SCOPe 2.06
  
• d1vdeb3 appears in the current release, SCOPe 2.08