Lineage for d1vdeb2 (1vde B:181-298)

  1. Root: SCOP 1.75
  2. 849709Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 868707Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
    alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243
  4. 868716Superfamily d.95.2: Homing endonucleases [55608] (2 families) (S)
  5. 868773Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
    duplication: contains tandem repeat of this fold
  6. 868778Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
    homing endonuclease with protein splicing activity
  7. 868779Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (7 PDB entries)
    Uniprot P17255 284-737
  8. 868792Domain d1vdeb2: 1vde B:181-298 [40583]
    Other proteins in same PDB: d1vdea1, d1vdeb1

Details for d1vdeb2

PDB Entry: 1vde (more details), 2.4 Å

PDB Description: pi-scei, a homing endonuclease with protein splicing activity
PDB Compounds: (B:) pi-scei

SCOP Domain Sequences for d1vdeb2:

Sequence, based on SEQRES records: (download)

>d1vdeb2 d.95.2.2 (B:181-298) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlyskvvrgngirnnlntenplwdaivglgflkd

Sequence, based on observed residues (ATOM records): (download)

>d1vdeb2 d.95.2.2 (B:181-298) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
pilyendhffdymqkskfhltiegpkvlayllglwigdglsdratfsvdsrdtslmervt
eyaeklnlcaeykdrkepqvaktvnlysklntenplwdaivglgflkd

SCOP Domain Coordinates for d1vdeb2:

Click to download the PDB-style file with coordinates for d1vdeb2.
(The format of our PDB-style files is described here.)

Timeline for d1vdeb2: