SCOP 1.67: Domain d1ef0b3: 1ef0 B:299-415

Lineage for d1ef0b3 (1ef0 B:299-415)

1. Root: SCOP 1.67

2. Class d: Alpha and beta proteins (a+b) [53931] (260 folds)

3. Fold d.95: Homing endonuclease-like [55603] (2 superfamilies)
   alpha-beta(2)-alpha-beta(2)-alpha; 2 layers: a/b; antiparallel sheet 1243

4. Superfamily d.95.2: Homing endonucleases [55608] (2 families)

5. Family d.95.2.2: Intein endonuclease [55614] (2 proteins)
   duplication: contains tandem repeat of this fold

6. Protein VMA1-derived endonuclease (VDE) PI-SceI [55615] (1 species)
   homing endonuclease with protein splicing activity

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [55616] (6 PDB entries)

8. Domain d1ef0b3: 1ef0 B:299-415 [40580]
   Other proteins in same PDB: d1ef0a1, d1ef0b1
   complexed with zn

Details for d1ef0b3

PDB Entry: 1ef0, 2.1 Å

PDB Description: crystal structure of pi-scei miniprecursor

SCOP Domain Sequences for d1ef0b3:

Sequence, based on SEQRES records:

>d1ef0b3 d.95.2.2 (B:299-415) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae)}
gvknipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslg
lvvsvnaepakvdmngtkhkisyaiymsggdvllnvlskcagskkfrpapaaafare

Sequence, based on observed residues (ATOM records):

>d1ef0b3 d.95.2.2 (B:299-415) VMA1-derived endonuclease (VDE) PI-SceI {Baker's yeast (Saccharomyces cerevisiae)}
gvknipsflstdnigtretflaglidsdgyvtdehgikatiktihtsvrdglvslarslg
lvvsvnisyaiymsggdvllnvlskcagskkfrpapaaafare

Timeline for d1ef0b3:

• d1ef0b3 first appeared (with stable ids) in SCOP 1.55
  
• d1ef0b3 appears in SCOP 1.65
  
• d1ef0b3 appears in SCOP 1.69
  
• d1ef0b3 appears in the current release, SCOPe 2.08