SCOPe 2.08: Domain d6yjzb_: 6yjz B:

Lineage for d6yjzb_ (6yjz B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.5: PfkB-like kinase [82515] (3 proteins)
   includes a variety of carbohydrate and pyrimidine kinases

6. Protein automated matches [190479] (4 species)
   not a true protein

7. Species Mouse (Mus musculus) [TaxId:10090] [404147] (3 PDB entries)

8. Domain d6yjzb_: 6yjz B: [404193]
   automated match to d1rfua_
   complexed with edo, gol, pg4

Details for d6yjzb_

PDB Entry: 6yjz, 2.45 Å

PDB Description: crystal structure of mouse pyridoxal kinase in apo form

PDB Compounds: (B:) Pyridoxal kinase

SCOPe Domain Sequences for d6yjzb_:

Sequence, based on SEQRES records:

>d6yjzb_ c.72.1.5 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdkwnge
gsmyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtv
vitssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfaamlla
wthkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedp
eivvqatvl

Sequence, based on observed residues (ATOM records):

>d6yjzb_ c.72.1.5 (B:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}
ecrvlsiqshvvrgyvgnraamfplqvlgfevdavnsvqfsnhtgyahwkgqvlksqelh
elyeglkvndvnkydyvltgytrdksflamvvdivrelkqqnsrlvyvcdpvmgdkwneg
smyvpqdllpvyrdkvvpvadiitpnqfeaellsgrkihsqeeafevmdmlhcmgpdtvv
itssdlpssqgsdylialgsqrmrkpdgstvtqrirmemrkveavfvgtgdlfaamllaw
thkhpdnlkvacektvsamqhvlqrtircakaeagegqkpspaqlelrmvqskrdiedpe
ivvqatvl

Timeline for d6yjzb_:

• d6yjzb_ first appeared in SCOPe 2.07