SCOPe 2.08: Domain d7deob1: 7deo B:334-530

Lineage for d7deob1 (7deo B:334-530)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (5 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)

8. Domain d7deob1: 7deo B:334-530 [401970]
   Other proteins in same PDB: d7deoa1, d7deoa2, d7deob2, d7deoc1, d7deoc2
   automated match to d2dd8s1
   complexed with ca, nag

Details for d7deob1

PDB Entry: 7deo, 2.5 Å

PDB Description: crystal structure of sars-cov-2 rbd in complex with a neutralizing antibody scfv

PDB Compounds: (B:) Spike protein S1

SCOPe Domain Sequences for d7deob1:

Sequence; same for both SEQRES and ATOM records:

>d7deob1 d.318.1.1 (B:334-530) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpkks

Timeline for d7deob1:

• d7deob1 first appeared in SCOPe 2.07