SCOPe 2.08: Domain d6vlhb_: 6vlh B:

Lineage for d6vlhb_ (6vlh B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
   Pfam PF00665

6. Protein Retroviral integrase, catalytic domain [53108] (5 species)

7. Species Human immunodeficiency virus type 1 [TaxId:11676] [53110] (74 PDB entries)

8. Domain d6vlhb_: 6vlh B: [400677]
   automated match to d3vq9c_
   complexed with iod, r2a, so4

Details for d6vlhb_

PDB Entry: 6vlh, 2.04 Å

PDB Description: hiv integrase core domain (in) in complex with dimer-spanning ligand

PDB Compounds: (B:) integrase

SCOPe Domain Sequences for d6vlhb_:

Sequence, based on SEQRES records:

>d6vlhb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
sspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvkaacewagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlkta
vqmavfihnkkrkggiggysagerivdiiatdi

Sequence, based on observed residues (ATOM records):

>d6vlhb_ c.55.3.2 (B:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
sspgiwqldcthlegkvilvavhvasgyieaevitgqetayfllklagrwpvktvhtdng
snftsttvkaacewagikqefgnkelkkiigqvrdqaehlktavqmavfihnkkrkggig
gysagerivdiiatdi

Timeline for d6vlhb_:

• d6vlhb_ first appeared in SCOPe 2.07