SCOPe 2.08: Domain d7l0nr_: 7l0n R:

Lineage for d7l0nr_ (7l0n R:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (5 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)

8. Domain d7l0nr_: 7l0n R: [399411]
   Other proteins in same PDB: d7l0nb1, d7l0nb2, d7l0nd1, d7l0nd2, d7l0ne_, d7l0nf_, d7l0nh_, d7l0nl1, d7l0nl2, d7l0nm_, d7l0nn1, d7l0nn2
   automated match to d2dd8s1
   complexed with cl, na, nag, pg4, pg5, pge, so4, zn

Details for d7l0nr_

PDB Entry: 7l0n, 2.78 Å

PDB Description: circulating sars-cov-2 spike n439k variants maintain fitness while evading antibody-mediated immunity

PDB Compounds: (R:) Spike protein S1

SCOPe Domain Sequences for d7l0nr_:

Sequence; same for both SEQRES and ATOM records:

>d7l0nr_ d.318.1.1 (R:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
fpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkln
dlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsknldskvggn
ynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpy
rvvvlsfellhapatvcgpkkst

Timeline for d7l0nr_:

• d7l0nr_ first appeared in SCOPe 2.07