Lineage for d6thn3_ (6thn 3:)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2430785Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2431062Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2431063Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2431078Protein Bovine enterovirus coat proteins [49676] (1 species)
  7. 2431079Species Bovine enterovirus, VG-5-27 [TaxId:12064] [49677] (3 PDB entries)
  8. 2431081Domain d6thn3_: 6thn 3: [395788]
    Other proteins in same PDB: d6thn1_
    automated match to d1bev3_
    complexed with myr, so4

Details for d6thn3_

PDB Entry: 6thn (more details), 2.6 Å

PDB Description: multiple genomic rna-coat protein contacts play vital roles in the assembly of infectious enterovirus-e symmetry expansion+2fold focused classification
PDB Compounds: (3:) Genome polyprotein

SCOPe Domain Sequences for d6thn3_:

Sequence; same for both SEQRES and ATOM records: (download)

>d6thn3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
glptkpgpgsyqfmttdedcspcilpdfqptpeifipgkvnnlleiaqvesileannreg
vegveryvipvsvqdaldaqiyalrlelggsgplsssllgtlakhytqwsgsveitcmft
gtfmttgkvllaytppggdmprnreeamlgthviwdfglqssitlvipwisashfrgvsn
ddvlnyqyyaaghvtiwyqtnmvippgfpntagiimmiaaqpnfsfriqkdredmtqtai
lq

SCOPe Domain Coordinates for d6thn3_:

Click to download the PDB-style file with coordinates for d6thn3_.
(The format of our PDB-style files is described here.)

Timeline for d6thn3_: