SCOPe 2.07: Domain d6thd3_: 6thd 3:

Lineage for d6thd3_ (6thd 3:)

1. Root: SCOPe 2.07

2. Class b: All beta proteins [48724] (178 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
   the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
   there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)

6. Protein Bovine enterovirus coat proteins [49676] (1 species)

7. Species Bovine enterovirus, VG-5-27 [TaxId:12064] [49677] (3 PDB entries)

8. Domain d6thd3_: 6thd 3: [395744]
   Other proteins in same PDB: d6thd1_
   automated match to d1bev3_
   complexed with myr, so4

Details for d6thd3_

PDB Entry: 6thd, 2.23 Å

PDB Description: multiple genomic rna-coat protein contacts play vital roles in the assembly of infectious enterovirus-e

PDB Compounds: (3:) Genome polyprotein

SCOPe Domain Sequences for d6thd3_:

Sequence; same for both SEQRES and ATOM records:

>d6thd3_ b.121.4.1 (3:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]}
glptkpgpgsyqfmttdedcspcilpdfqptpeifipgkvnnlleiaqvesileannreg
vegveryvipvsvqdaldaqiyalrlelggsgplsssllgtlakhytqwsgsveitcmft
gtfmttgkvllaytppggdmprnreeamlgthviwdfglqssitlvipwisashfrgvsn
ddvlnyqyyaaghvtiwyqtnmvippgfpntagiimmiaaqpnfsfriqkdredmtqtai
lq

Timeline for d6thd3_:

• d6thd3_ is new in SCOPe 2.07-stable
  
• d6thd3_ appears in the current release, SCOPe 2.08