Lineage for d6wyqa_ (6wyq A:)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2873861Fold c.42: Arginase/deacetylase [52767] (1 superfamily)
    3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
  4. 2873862Superfamily c.42.1: Arginase/deacetylase [52768] (3 families) (S)
  5. 2874326Family c.42.1.0: automated matches [191435] (1 protein)
    not a true family
  6. 2874327Protein automated matches [190626] (14 species)
    not a true protein
  7. 2874462Species Zebrafish (Danio rerio) [TaxId:7955] [319911] (55 PDB entries)
  8. 2874495Domain d6wyqa_: 6wyq A: [393130]
    automated match to d5g0ga_
    complexed with k, ufj, zn; mutant

Details for d6wyqa_

PDB Entry: 6wyq (more details), 1.9 Å

PDB Description: crystal structure of danio rerio histone deacetylase 6 catalytic domain 1 (cd1) k330l mutant complexed with 4-iodo-saha
PDB Compounds: (A:) Histone deacetylase 6

SCOPe Domain Sequences for d6wyqa_:

Sequence, based on SEQRES records: (download)

>d6wyqa_ c.42.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
tgtglvyvdaftrfhclwdashpecparvstvmemletegllgrcvqvearavtedelll
vhtkeyvelmkstqnmteeelktlaekydsvylhpgffssaclsvgsvlqlvdkvmtsql
rngfsinrppghhaqadkmngfcmfnnlaiaaryaqkrhrvqrvlivdwdvhhgqgiqyi
feedpsvlyfsvhryedgsfwphlkesdsssvgsgagqgyninlpwnkvgmesgdyitaf
qqlllpvayefqpqlvlvaagfdavigdplggmqvspecfsilthmlkgvaqgrlvlale
ggynlqstaegvcasmrsllgdpcphlpssgapcesalksisktisdlypfwkslqt

Sequence, based on observed residues (ATOM records): (download)

>d6wyqa_ c.42.1.0 (A:) automated matches {Zebrafish (Danio rerio) [TaxId: 7955]}
tgtglvyvdaftrfhclwdashpecparvstvmemletegllgrcvqvearavtedelll
vhtkeyvelmkstqnmteeelktlaekydsvylhpgffssaclsvgsvlqlvdkvmtsql
rngfsinrppghhaqadkmngfcmfnnlaiaaryaqkrhrvqrvlivdwdvhhgqgiqyi
feedpsvlyfsvhryedgsfwphlkesdsssvgsgagqgyninlpwnkvgmesgdyitaf
qqlllpvayefqpqlvlvaagfdavigdplggmqvspecfsilthmlkgvaqgrlvlale
ggynlqstaegvcasmrsllgdpcphlpsspcesalksisktisdlypfwkslqt

SCOPe Domain Coordinates for d6wyqa_:

Click to download the PDB-style file with coordinates for d6wyqa_.
(The format of our PDB-style files is described here.)

Timeline for d6wyqa_: