SCOPe 2.08: Domain d6vimf2: 6vim F:133-359

Lineage for d6vimf2 (6vim F:133-359)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)

6. Protein automated matches [226997] (13 species)
   not a true protein

7. Species Pseudomonas putida [TaxId:303] [228631] (7 PDB entries)

8. Domain d6vimf2: 6vim F:133-359 [392710]
   Other proteins in same PDB: d6vima1, d6vimb1, d6vimc1, d6vimd1, d6vime1, d6vimf1, d6vimg1, d6vimh1
   automated match to d1dtna1
   complexed with edo, mg, pbc

Details for d6vimf2

PDB Entry: 6vim, 2 Å

PDB Description: p. putida mandelate racemase co-crystallized with phenylboronic acid

PDB Compounds: (F:) mandelate racemase

SCOPe Domain Sequences for d6vimf2:

Sequence; same for both SEQRES and ATOM records:

>d6vimf2 c.1.11.2 (F:133-359) automated matches {Pseudomonas putida [TaxId: 303]}
pvqaydshsldgvklateravtaaelgfravktkigypaldqdlavvrsirqavgddfgi
mvdynqsldvpaaikrsqalqqegvtwieeptlqhdyeghqriqsklnvpvqmgenwlgp
eemfkalsigacrlampdamkiggvtgwirasalaqqfgipmsshlfqeisahllaatpt
ahwlerldlagsvieptltfeggnavipdlpgvgiiwrekeigkylv

Timeline for d6vimf2:

• d6vimf2 first appeared in SCOPe 2.07