SCOPe 2.08: Domain d6ly5a_: 6ly5 a:

Lineage for d6ly5a_ (6ly5 a:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.29: Photosystem I subunits PsaA/PsaB [81559] (1 superfamily)
   core:11 transmembrane helices

4. Superfamily f.29.1: Photosystem I subunits PsaA/PsaB [81558] (2 families)
   automatically mapped to Pfam PF00223

5. Family f.29.1.1: Photosystem I subunits PsaA/PsaB [81557] (3 proteins)
   Photosystem I p700 chlorophyll a apoprotein a1/a2

6. Protein automated matches [236561] (10 species)
   not a true protein

7. Species Chaetoceros gracilis [TaxId:184592] [391015] (1 PDB entry)

8. Domain d6ly5a_: 6ly5 a: [391016]
   Other proteins in same PDB: d6ly5c_, d6ly5d_, d6ly5e_, d6ly5f1, d6ly5f2, d6ly5j_
   automated match to d4y28a_
   complexed with a86, bcr, cla, dd6, dgd, kc1, lhg, lmg, lmt, pqn, sf4, sqd

Details for d6ly5a_

PDB Entry: 6ly5, 2.38 Å

PDB Description: organization and energy transfer in a huge diatom psi-fcpi supercomplex

PDB Compounds: (a:) PsaA

SCOPe Domain Sequences for d6ly5a_:

Sequence; same for both SEQRES and ATOM records:

>d6ly5a_ f.29.1.1 (a:) automated matches {Chaetoceros gracilis [TaxId: 184592]}
knvqifvekdavetsfekwsqpghfsrtlakgpktttwiwnlhadahdfdsqtnsleevs
rkifsahfgqlaaiflwisgmhfhgayfsnysawlsdpikikqssqvvwpivgqeilnad
vggnfqgvqttsgwfqmwraegitsevelywiaigglimsalmlfagwfhyhkaapklew
fqnaesmmnhhlagllglgclswsghqihialpinklldagvspqeiplpheflinrdlm
aqlypsfekgltpffsgqwgvysdfltfkgglnpvtgglwlsdiahhhlalsvlfiiagh
myrtnwgighsmkeileahkgpftgeghkglyeilttswhaqlainlamigslsiivahh
myamppypyiatdyatqlslfthhmwiggfcvvggaahgaifmvrdytpannynnlldrd
lrhrdeiisnlnwvciflgchafgfyihndtmralgrpqdmfsdkaiqlqpifaqwiqni
hllapgttapnalattsyafggdivevggkiammpiklgtadfmvhhihaftihvtvlil
lkgvlyarssklipdkanlgfrfpcdgpgrggtcqssswdhvflglfwmynaisvvifhf
swkmqsdvwgtvtadgsishitggnfaqssitingwlrdflwsqasqviqsygsassayg
liflgahfiwafslmflfsgrgywqeliesivwahnklnfapaiqpralsitqgravgla
hyllggigttwafflarslsit

Timeline for d6ly5a_:

• d6ly5a_ first appeared in SCOPe 2.07