Lineage for d6lapc_ (6lap C:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2821496Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2821778Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2821779Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 proteins)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2822070Protein automated matches [190854] (27 species)
    not a true protein
  7. 2822108Species Echovirus e11 [TaxId:12078] [390813] (10 PDB entries)
  8. 2822116Domain d6lapc_: 6lap C: [390814]
    Other proteins in same PDB: d6lapa_
    automated match to d1h8tc_

Details for d6lapc_

PDB Entry: 6lap (more details), 2.49 Å

PDB Description: cryo-em structure of echovirus 11 a-particle at ph 7.4
PDB Compounds: (C:) capsid protein vp3

SCOPe Domain Sequences for d6lapc_:

Sequence, based on SEQRES records: (download)

>d6lapc_ b.121.4.1 (C:) automated matches {Echovirus e11 [TaxId: 12078]}
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqthyrlvq
qdeytsagnvtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi

Sequence, based on observed residues (ATOM records): (download)

>d6lapc_ b.121.4.1 (C:) automated matches {Echovirus e11 [TaxId: 12078]}
glpvmntpgsnqfltsddfqspsampqfdvtpelnipgevqnlmeiaevdsvvpvnnveg
kldtmeiyripvqsgnhqssqvfgfqvqpgldnvfkhtllgeilnyyahwsgsikltfvf
cgsamatgkfllayappganapksrkdamlgthiiwdvglqsscvlcipwisqtytsagn
vtcwyqtgivvpagtptscsimcfvsacndfsvrllkdtpfi

SCOPe Domain Coordinates for d6lapc_:

Click to download the PDB-style file with coordinates for d6lapc_.
(The format of our PDB-style files is described here.)

Timeline for d6lapc_:

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Domains from other chains:
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d6lapa_