Class d: Alpha and beta proteins (a+b) [53931] (396 folds) |
Fold d.3: Cysteine proteinases [54000] (1 superfamily) consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn |
Superfamily d.3.1: Cysteine proteinases [54001] (24 families) the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet |
Family d.3.1.23: Papain-like viral protease catalytic domain [310648] (2 proteins) C-terminal part of Pfam PF08715 |
Protein automated matches [310868] (6 species) not a true protein |
Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385225] (34 PDB entries) |
Domain d7cmda2: 7cmd A:62-315 [390002] Other proteins in same PDB: d7cmda1, d7cmda3, d7cmdb1, d7cmdb3, d7cmdc1, d7cmdc3, d7cmdd1, d7cmdd3 automated match to d4m0wa2 complexed with ttt, zn |
PDB Entry: 7cmd (more details), 2.59 Å
SCOPe Domain Sequences for d7cmda2:
Sequence, based on SEQRES records: (download)
>d7cmda2 d.3.1.23 (A:62-315) automated matches {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]} dtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnncylatalltlq qielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanldsc krvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvqipctcgkqatkylvqqespf vmmsappaqyelkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgpit dvfykensytttik
>d7cmda2 d.3.1.23 (A:62-315) automated matches {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]} dtlrveafeyyhttdpsflgrymsalnhtkkwkypqvngltsikwadnncylatalltlq qielkfnppalqdayyrarageaanfcalilaycnktvgelgdvretmsylfqhanldsc krvlnvvcktcgqqqttlkgveavmymgtlsyeqfkkgvtkylvqqespfvmmsappaqy elkhgtftcaseytgnyqcghykhitsketlycidgalltksseykgpitdvfykensyt ttik
Timeline for d7cmda2: