SCOPe 2.08: Domain d6y6ao_: 6y6a O:

Lineage for d6y6ao_ (6y6a O:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.6: Group I dsDNA viruses [88648] (2 families)

5. Family b.121.6.1: Papovaviridae-like VP [88649] (3 proteins)

6. Protein automated matches [191200] (13 species)
   not a true protein

7. Species Finch polyomavirus [TaxId:349564] [389100] (1 PDB entry)

8. Domain d6y6ao_: 6y6a O: [389201]
   automated match to d4mbzj_
   complexed with cl, mg, sia

Details for d6y6ao_

PDB Entry: 6y6a, 2.65 Å

PDB Description: structure of finch polyomavirus vp1 in complex with 2-o-methyl-5-n- acetyl-alpha-d-neuraminic acid

PDB Compounds: (O:) Capsid protein VP1

SCOPe Domain Sequences for d6y6ao_:

Sequence, based on SEQRES records:

>d6y6ao_ b.121.6.1 (O:) automated matches {Finch polyomavirus [TaxId: 349564]}
ggievldvktgpdstttieaylnprvgqnwgfsteitvasngyndaphlteipcyssari
slpllneditsptllmweavsvktevvgissmlnmhsyglrafggygggytiegshihff
svggepldlqglmqnhstqypsplvgpkkpdgttddsaqvlnpiykakldkdatypiecw
cpdpsrnensryfgsytggvetppvlsftntsttilldengvgplckgdglylssadvag
tfvqqtsqkqywrglpryfnitlrkravk

Sequence, based on observed residues (ATOM records):

>d6y6ao_ b.121.6.1 (O:) automated matches {Finch polyomavirus [TaxId: 349564]}
ggievldvktgpdstttieaylnprvgqnwgfsteitvasngyndaphlteipcyssari
slpllnllmweavsvktevvgissmlnmhsyglrafggygggytiegshihffsvggepl
dlqglmqnhstqypsplvgpkkpdgttddsaqvlnpiykakldkdatypiecwcpdpsrn
ensryfgsytggvetppvlsftntsttilldengvgplckgdglylssadvagtfvqqts
qkqywrglpryfnitlrkravk

Timeline for d6y6ao_:

• d6y6ao_ first appeared in SCOPe 2.07