Lineage for d6xc2z_ (6xc2 Z:)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3010708Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. 3010709Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. 3010710Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
    part of PfamB PB000266
  6. 3010711Protein Spike protein S1 [143589] (5 species)
  7. 3010746Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)
  8. 3010870Domain d6xc2z_: 6xc2 Z: [389172]
    Other proteins in same PDB: d6xc2h_, d6xc2l1, d6xc2l2, d6xc2x_, d6xc2y1, d6xc2y2
    automated match to d2dd8s1
    complexed with nag

Details for d6xc2z_

PDB Entry: 6xc2 (more details), 3.11 Å

PDB Description: crystal structure of sars-cov-2 receptor binding domain in complex with neutralizing antibody cc12.1
PDB Compounds: (Z:) Spike protein S1

SCOPe Domain Sequences for d6xc2z_:

Sequence, based on SEQRES records: (download)

>d6xc2z_ d.318.1.1 (Z:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpk

Sequence, based on observed residues (ATOM records): (download)

>d6xc2z_ d.318.1.1 (Z:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvnynylyrl
frksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsf
ellhapatvcgpk

SCOPe Domain Coordinates for d6xc2z_:

Click to download the PDB-style file with coordinates for d6xc2z_.
(The format of our PDB-style files is described here.)

Timeline for d6xc2z_: