SCOPe 2.08: Domain d6xc3c_: 6xc3 C:

Lineage for d6xc3c_ (6xc3 C:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (5 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (118 PDB entries)

8. Domain d6xc3c_: 6xc3 C: [389169]
   Other proteins in same PDB: d6xc3a1, d6xc3a2, d6xc3b_, d6xc3h_, d6xc3l1, d6xc3l2
   automated match to d2dd8s1

Details for d6xc3c_

PDB Entry: 6xc3, 2.7 Å

PDB Description: crystal structure of sars-cov-2 receptor binding domain in complex with antibodies cc12.1 and cr3022

PDB Compounds: (C:) Spike protein S1

SCOPe Domain Sequences for d6xc3c_:

Sequence, based on SEQRES records:

>d6xc3c_ d.318.1.1 (C:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpk

Sequence, based on observed residues (ATOM records):

>d6xc3c_ d.318.1.1 (C:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvnynylyrl
frksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsf
ellhapatvcgpk

Timeline for d6xc3c_:

• d6xc3c_ first appeared in SCOPe 2.07