SCOPe 2.08: Domain d6oxmb_: 6oxm B:

Lineage for d6oxmb_ (6oxm B:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.0: automated matches [191328] (1 protein)
   not a true family

6. Protein automated matches [190151] (166 species)
   not a true protein

7. Species Verrucomicrobium spinosum [TaxId:2736] [388571] (1 PDB entry)

8. Domain d6oxmb_: 6oxm B: [388572]
   automated match to d3qgua_

Details for d6oxmb_

PDB Entry: 6oxm, 2.25 Å

PDB Description: crystal structure of l,l-diaminopimelate aminotransferase (dapl) from verrucomicrobium spinosum

PDB Compounds: (B:) Diaminopimelate aminotransferase

SCOPe Domain Sequences for d6oxmb_:

Sequence, based on SEQRES records:

>d6oxmb_ c.67.1.0 (B:) automated matches {Verrucomicrobium spinosum [TaxId: 2736]}
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrstfkgygpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildi
fgqgntiaitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekad
liylcypnnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegar
dcaiefrsfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyiv
qkgaealytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpaglts
wqmfdkmlneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk

Sequence, based on observed residues (ATOM records):

>d6oxmb_ c.67.1.0 (B:) automated matches {Verrucomicrobium spinosum [TaxId: 2736]}
malinenflklkagylfpeiarrvkaftegnpeaaqrlircgigdvtealpeavryamhe
avdelgnrpeqgydflrnaiadndykarglpieadeifisdgskcdtgnildifgqgnti
aitdpvypvyvdtnvmigntgeadengayaglvylkctpengfvpdipqekadliylcyp
nnptgavatrpqleawvkyarengsvllydaayeafiqdptiphsifeiegardcaiefr
sfsknggftgvrcayvvipkslmgrkkngeaqalhplwsrrhstkfngasyivqkgaeal
ytdegksqtkaliehymgnaallveacknaglsvfggvnapyvwvgcpagltswqmfdkm
lneanvvitpgsgfgsagegyfrisafnsranveevcrriaalk

Timeline for d6oxmb_:

• d6oxmb_ first appeared in SCOPe 2.07