SCOPe 2.08: Domain d6l0ca_: 6l0c A:

Lineage for d6l0ca_ (6l0c A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
   consists of one domain of this fold

5. Family c.55.3.2: Retroviral integrase, catalytic domain [53107] (2 proteins)
   Pfam PF00665

6. Protein automated matches [190209] (5 species)
   not a true protein

7. Species Human immunodeficiency virus 1 [TaxId:11676] [186963] (69 PDB entries)

8. Domain d6l0ca_: 6l0c A: [388504]
   automated match to d3vq9c_
   complexed with ars, so4

Details for d6l0ca_

PDB Entry: 6l0c, 2.1 Å

PDB Description: crystal structure of hiv-1 integrase catalytic core domain (a128t/k173q/f185k)

PDB Compounds: (A:) integrase

SCOPe Domain Sequences for d6l0ca_:

Sequence, based on SEQRES records:

>d6l0ca_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvktacwwagikqefgipynpqsqgviesmnkelkkiigqvrdqaehlqta
vqmavfihnkkrkggiggysagerivdiiatdi

Sequence, based on observed residues (ATOM records):

>d6l0ca_ c.55.3.2 (A:) automated matches {Human immunodeficiency virus 1 [TaxId: 11676]}
cspgiwqldcthlegkvilvavhvasgyieaevipaetgqetayfllklagrwpvktvht
dngsnftsttvktacwwagikqefgiesmnkelkkiigqvrdqaehlqtavqmavfihnk
krkggysagerivdiiatdi

Timeline for d6l0ca_:

• d6l0ca_ first appeared in SCOPe 2.07