SCOPe 2.07: Domain d6k9md1: 6k9m D:221-459

Lineage for d6k9md1 (6k9m D:221-459)

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.123: Nuclear receptor ligand-binding domain [48507] (1 superfamily)
   multihelical; 3 layers or orthogonally packed helices

4. Superfamily a.123.1: Nuclear receptor ligand-binding domain [48508] (2 families)

5. Family a.123.1.1: Nuclear receptor ligand-binding domain [48509] (34 proteins)

6. Protein automated matches [190059] (14 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [187214] (212 PDB entries)

8. Domain d6k9md1: 6k9m D:221-459 [387741]
   Other proteins in same PDB: d6k9ma2, d6k9mb2, d6k9mc2, d6k9md2
   automated match to d5i4va_
   protein/DNA complex; complexed with d43

Details for d6k9md1

PDB Entry: 6k9m, 2.9 Å

PDB Description: human lxr-beta in complex with an agonist

PDB Compounds: (D:) oxysterols receptor lxr-beta

SCOPe Domain Sequences for d6k9md1:

Sequence, based on SEQRES records:

>d6k9md1 a.123.1.1 (D:221-459) automated matches {Human (Homo sapiens) [TaxId: 9606]}
taaqelmiqqlvaaqlqcnkrsfsdqpkvtpwplgadpasgsasqqrfahftelaiisvq
eivdfakqvpgflqlgredqiallkastieimlletarrynhetecitflkdftyskddf
hraglqvefinpifefsramrrlglddaeyalliainifsadrpnvqepgrvealqqpyv
eallsytrikrpqdqlrfprmlmklvslrtlssvhseqvfalrlqdkklppllseiwdv

Sequence, based on observed residues (ATOM records):

>d6k9md1 a.123.1.1 (D:221-459) automated matches {Human (Homo sapiens) [TaxId: 9606]}
taaqelmiqqlvaaqlqcnkrsfsdkvtpwpadpasgsasqqrfahftelaiisvqeivd
fakqvpgflqlgredqiallkastieimlletarrynhetecitflkdftyskddfhrag
lqvefinpifefsramrrlglddaeyalliainifsadrpnvqepgrvealqqpyveall
sytrikrpqdqlrfprmlmklvslrtlssvhseqvfalrlqdkklppllseiwdv

Timeline for d6k9md1:

• d6k9md1 is new in SCOPe 2.07-stable
  
• d6k9md1 appears in the current release, SCOPe 2.08