SCOPe 2.08: Domain d5qzkb2: 5qzk B:170-317

Lineage for d5qzkb2 (5qzk B:170-317)

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.118: alpha-alpha superhelix [48370] (28 superfamilies)
   multihelical; 2 (curved) layers: alpha/alpha; right-handed superhelix

4. Superfamily a.118.29: U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain-like [345916] (1 family)
   C-terminal part of Pfam PF05282
   Structural similarity with VHS domains (48464) noted in PubMed 21764848, but no compelling evidence of homology

5. Family a.118.29.1: U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain-like [345957] (2 proteins)

6. Protein U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain [346042] (1 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [346205] (158 PDB entries)

8. Domain d5qzkb2: 5qzk B:170-317 [387480]
   Other proteins in same PDB: d5qzka1, d5qzka2, d5qzkb1
   automated match to d3sbtb2

Details for d5qzkb2

PDB Entry: 5qzk, 1.73 Å

PDB Description: pandda analysis group deposition -- auto-refined data of aar2/rnaseh for ground state model 35

PDB Compounds: (B:) A1 cistron-splicing factor AAR2

SCOPe Domain Sequences for d5qzkb2:

Sequence; same for both SEQRES and ATOM records:

>d5qzkb2 a.118.29.1 (B:170-317) U5 small nuclear riboprotein particle assembly factor Aar2 C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
sdpahslnytvinfksreairpghemedfldksyylntvmlqgifknssnyfgelqfafl
namffgnygsslqwhamielicssatvpkhmldkldeilyyqiktlpeqysdillnervw
niclyssfqknslhntekimenkypell

Timeline for d5qzkb2:

• d5qzkb2 first appeared in SCOPe 2.07