SCOPe 2.07: Domain d5qz8a1: 5qz8 A:1836-2069

Lineage for d5qz8a1 (5qz8 A:1836-2069)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.14: Prp8 beta-finger domain-like [159638] (1 protein)
   automatically mapped to Pfam PF12134

6. Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [159639] (4 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234880] (138 PDB entries)

8. Domain d5qz8a1: 5qz8 A:1836-2069 [387439]
   Other proteins in same PDB: d5qz8a2, d5qz8b1, d5qz8b2
   automated match to d3e9la1

Details for d5qz8a1

PDB Entry: 5qz8, 1.62 Å

PDB Description: pandda analysis group deposition -- auto-refined data of aar2/rnaseh for ground state model 23

PDB Compounds: (A:) Pre-mRNA-splicing factor 8

SCOPe Domain Sequences for d5qz8a1:

Sequence; same for both SEQRES and ATOM records:

>d5qz8a1 c.55.3.14 (A:1836-2069) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
nssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiih
tsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpnia
irptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlllral
ktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynv

Timeline for d5qz8a1:

• d5qz8a1 is new in SCOPe 2.07-stable
  
• d5qz8a1 appears in the current release, SCOPe 2.08