Lineage for d5qy6a1 (5qy6 A:1836-2069)

  1. Root: SCOPe 2.07
  2. 2434694Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2491249Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2493668Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2494816Family c.55.3.14: Prp8 beta-finger domain-like [159638] (1 protein)
    automatically mapped to Pfam PF12134
  6. 2494817Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [159639] (4 species)
  7. 2494826Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234880] (138 PDB entries)
  8. 2494851Domain d5qy6a1: 5qy6 A:1836-2069 [387348]
    Other proteins in same PDB: d5qy6a2, d5qy6b1, d5qy6b2
    automated match to d3e9la1
    complexed with pgr, so4, sy7

Details for d5qy6a1

PDB Entry: 5qy6 (more details), 1.51 Å

PDB Description: pandda analysis group deposition -- aar2/rnaseh in complex with fragment f2x-entry c05a
PDB Compounds: (A:) Pre-mRNA-splicing factor 8

SCOPe Domain Sequences for d5qy6a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5qy6a1 c.55.3.14 (A:1836-2069) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
nssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiih
tsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpnia
irptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlllral
ktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynv

SCOPe Domain Coordinates for d5qy6a1:

Click to download the PDB-style file with coordinates for d5qy6a1.
(The format of our PDB-style files is described here.)

Timeline for d5qy6a1:

View in 3D
Domains from same chain:
(mouse over for more information)
d5qy6a2