Lineage for d5qyma1 (5qym A:1836-2069)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2460924Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2462855Superfamily c.55.3: Ribonuclease H-like [53098] (16 families) (S)
    consists of one domain of this fold
  5. 2463945Family c.55.3.14: Prp8 beta-finger domain-like [159638] (1 protein)
    automatically mapped to Pfam PF12134
  6. 2463946Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [159639] (4 species)
  7. 2463955Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234880] (138 PDB entries)
  8. 3087264Domain d5qyma1: 5qym A:1836-2069 [387326]
    Other proteins in same PDB: d5qyma2, d5qymb1, d5qymb2
    automated match to d3e9la1

Details for d5qyma1

PDB Entry: 5qym (more details), 1.47 Å

PDB Description: pandda analysis group deposition -- auto-refined data of aar2/rnaseh for ground state model 02
PDB Compounds: (A:) Pre-mRNA-splicing factor 8

SCOPe Domain Sequences for d5qyma1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5qyma1 c.55.3.14 (A:1836-2069) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
nssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiih
tsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpnia
irptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlllral
ktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynv

SCOPe Domain Coordinates for d5qyma1:

Click to download the PDB-style file with coordinates for d5qyma1.
(The format of our PDB-style files is described here.)

Timeline for d5qyma1:

  • d5qyma1 is new in SCOPe 2.07-stable

View in 3D
Domains from same chain:
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d5qyma2