Lineage for d5qy5a1 (5qy5 A:1836-2089)

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. Superfamily c.55.3: Ribonuclease H-like [53098] (18 families) (S)
    consists of one domain of this fold
  5. Family c.55.3.14: Prp8 beta-finger domain-like [159638] (1 protein)
    automatically mapped to Pfam PF12134
  6. Protein Pre-mRNA splicing factor 8, Prp8 / Spp42 [159639] (4 species)
  7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [234880] (138 PDB entries)
  8. Domain d5qy5a1: 5qy5 A:1836-2089 [387245]
    Other proteins in same PDB: d5qy5a2, d5qy5b1, d5qy5b2
    automated match to d3e9la1
    complexed with pgr, so4, sya

Details for d5qy5a1

PDB Entry: 5qy5 (more details), 1.51 Å

PDB Description: pandda analysis group deposition -- aar2/rnaseh in complex with fragment f2x-entry c02a
PDB Compounds: (A:) Pre-mRNA-splicing factor 8

SCOPe Domain Sequences for d5qy5a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d5qy5a1 c.55.3.14 (A:1836-2089) Pre-mRNA splicing factor 8, Prp8 / Spp42 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 559292]}
nssnyaelfnndiklfvddtnvyrvtvhktfegnvatkaingciftlnpktghlflkiih
tsvwagqkrlsqlakwktaeevsalvrslpkeeqpkqiivtrkamldplevhmldfpnia
irptelrlpfsaamsidklsdvvmkatepqmvlfniyddwldrissytafsrltlllral
ktneesakmillsdptitiksyhlwpsftdeqwitiesqmrdlilteygrkynvnisalt
qteikdiilgqnik

SCOPe Domain Coordinates for d5qy5a1 are not available.

Timeline for d5qy5a1:

Domains from same chain:
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d5qy5a2
Domains from other chains:
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d5qy5b1, d5qy5b2