SCOPe 2.07: Domain d6yz5e_: 6yz5 E:

Lineage for d6yz5e_ (6yz5 E:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (4 species)

7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [382292] (92 PDB entries)

8. Domain d6yz5e_: 6yz5 E: [387022]
   Other proteins in same PDB: d6yz5f_
   automated match to d2dd8s1
   complexed with act, edo, nag

Details for d6yz5e_

PDB Entry: 6yz5, 1.8 Å

PDB Description: h11-d4 complex with sars-cov-2 rbd

PDB Compounds: (E:) Spike glycoprotein

SCOPe Domain Sequences for d6yz5e_:

Sequence; same for both SEQRES and ATOM records:

>d6yz5e_ d.318.1.1 (E:) Spike protein S1 {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpk

Timeline for d6yz5e_:

• d6yz5e_ is new in SCOPe 2.07-stable
  
• d6yz5e_ appears in the current release, SCOPe 2.08