Lineage for d5rgua_ (5rgu A:)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (8 species)
    contains an extra alpha-helical domain
  7. Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385979] (315 PDB entries)
  8. Domain d5rgua_: 5rgu A: [386451]
    automated match to d3ea8a_
    complexed with dms, ugd

    has additional subdomain(s) that are not in the common domain

Details for d5rgua_

PDB Entry: 5rgu (more details), 2.11 Å

PDB Description: pandda analysis group deposition sars-cov-2 main protease fragment screen -- crystal structure of sars-cov-2 main protease in complex with z4444622180 (mpro-x2562)
PDB Compounds: (A:) 3C-like proteinase

SCOPe Domain Sequences for d5rgua_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5rgua_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
sgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllir
ksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyng
spsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegn
fygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynye
pltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqc
sgvt

SCOPe Domain Coordinates for d5rgua_ are not available.

Timeline for d5rgua_: