SCOPe 2.08: Domain d6sqoc1: 6sqo C:1-76

Lineage for d6sqoc1 (6sqo C:1-76)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (15 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (11 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein Ubiquitin [54238] (9 species)

7. Species Human (Homo sapiens) [TaxId:9606] [54239] (312 PDB entries)
   Uniprot P62988
   identical sequence in many other species

8. Domain d6sqoc1: 6sqo C:1-76 [385061]
   Other proteins in same PDB: d6sqob_, d6sqoc2, d6sqoe_, d6sqof2
   automated match to d4k1rb_
   complexed with cl, no3, zn

Details for d6sqoc1

PDB Entry: 6sqo, 1.41 Å

PDB Description: crystal structure of human mdm2 ring domain homodimer bound to ubch5b- ub

PDB Compounds: (C:) Ubiquitin-40S ribosomal protein S27a

SCOPe Domain Sequences for d6sqoc1:

Sequence; same for both SEQRES and ATOM records:

>d6sqoc1 d.15.1.1 (C:1-76) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgg

Timeline for d6sqoc1:

• d6sqoc1 first appeared in SCOPe 2.07