Lineage for d5rgka_ (5rgk A:)

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2794584Fold b.47: Trypsin-like serine proteases [50493] (1 superfamily)
    barrel, closed; n=6, S=8; greek-key
    duplication: consists of two domains of the same fold
  4. 2794585Superfamily b.47.1: Trypsin-like serine proteases [50494] (5 families) (S)
  5. 2797303Family b.47.1.4: Viral cysteine protease of trypsin fold [50603] (5 proteins)
  6. 2797364Protein Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) [74979] (8 species)
    contains an extra alpha-helical domain
  7. 2797513Species Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [385979] (315 PDB entries)
  8. 2797535Domain d5rgka_: 5rgk A: [383743]
    automated match to d3ea8a_
    complexed with dms, u0v

    has additional subdomain(s) that are not in the common domain

Details for d5rgka_

PDB Entry: 5rgk (more details), 1.43 Å

PDB Description: pandda analysis group deposition sars-cov-2 main protease fragment screen -- crystal structure of sars-cov-2 main protease in complex with z1310876699 (mpro-x0426)
PDB Compounds: (A:) 3C-like proteinase

SCOPe Domain Sequences for d5rgka_:

Sequence; same for both SEQRES and ATOM records: (download)

>d5rgka_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) {Severe acute respiratory syndrome coronavirus 2 [TaxId: 2697049]}
sgfrkmafpsgkvegcmvqvtcgtttlnglwlddvvycprhvictsedmlnpnyedllir
ksnhnflvqagnvqlrvighsmqncvlklkvdtanpktpkykfvriqpgqtfsvlacyng
spsgvyqcamrpnftikgsflngscgsvgfnidydcvsfcymhhmelptgvhagtdlegn
fygpfvdrqtaqaagtdttitvnvlawlyaavingdrwflnrftttlndfnlvamkynye
pltqdhvdilgplsaqtgiavldmcaslkellqngmngrtilgsalledeftpfdvvrqc
sgvt

SCOPe Domain Coordinates for d5rgka_:

Click to download the PDB-style file with coordinates for d5rgka_.
(The format of our PDB-style files is described here.)

Timeline for d5rgka_: