SCOPe 2.08: Domain d6ygza_: 6ygz A:

Lineage for d6ygza_ (6ygz A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.20: tRNA-guanine transglycosylase [51713] (1 family)

5. Family c.1.20.1: tRNA-guanine transglycosylase [51714] (2 proteins)

6. Protein Queosine tRNA-guanine transglycosylase [51715] (3 species)
   contains zinc-binding subdomain

7. Species Zymomonas mobilis [TaxId:542] [51716] (156 PDB entries)
   Uniprot P28720

8. Domain d6ygza_: 6ygz A: [383556]
   automated match to d5lpta_
   protein/RNA complex; complexed with ne8, zn

Details for d6ygza_

PDB Entry: 6ygz, 1.86 Å

PDB Description: trna guanine transglycosylase (tgt) labelled with 5-fluoro-tryptophan in co-crystallized complex with 6-amino-4-(2-phenylethyl)-1,7- dihydro-8h-imidazo[4,5-g]quinazolin-8-one

PDB Compounds: (A:) Queuine tRNA-ribosyltransferase

SCOPe Domain Sequences for d6ygza_:

Sequence, based on SEQRES records:

>d6ygza_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtaatvkalkpetvratgadiilg
ntyhlmlrpgaeriaklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkshld
gsrhmlspersieiqhllgsdivmafdectpypatpsraassmersmrwakrsrdafdsr
keqaenaalfgiqqgsvfenlrqqsadalaeigfdgyavgglavgegqdemfrvldfsvp
mlpddkphylmgvgkpddivgavergidmfdcvlptrsgrngqaftwdgpinirnarfse
dlkpldsechcavcqkwsrayihhlirageilgamlmtehniafyqqlmqkirdsisegr
fsqfaqdfraryfa

Sequence, based on observed residues (ATOM records):

>d6ygza_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]}
drprfsfsiaaregkartgtiemkrgvirtpafmpvgtagadiilgntyhlmlrpgaeri
aklgglhsfmgwdrpiltdsggyqvmslssltkqseegvtfkmlspersieiqhllgsdi
vmafdectpypatpsraassmersmrwakrsrdafdsrkeqaenaalfgiqqgsvfenlr
qqsadalaeigfdgyavgglavgegqdemfrvldfsvpmlpddkphylmgvgkpddivga
vergidmfdcvlptrsgrngqaftwdgpinirnarfsedlkpldsechcavcqkwsrayi
hhlirageilgamlmtehniafyqqlmqkirdsisegrfsqfaqdfraryfa

Timeline for d6ygza_:

• d6ygza_ first appeared in SCOPe 2.07